Brown, who has been at the club for five years, led them from the Isthmian League to the Football League, but he has departed along with assistant Stuart Cash.
Brown joined the Dons in 2007, securing three promotions in four seasons, but he has lost his last three games in charge.
Simon Bassey has been appointed as caretaker manager.
Restore Data
| Team | P | W | D | L | F | A | GD | PTS | |
| C | Stockport CountyStockport | 45 | 27 | 11 | 7 | 95 | 46 | 49 | 92 |
| P | Mansfield TownMansfield | 45 | 24 | 13 | 8 | 89 | 46 | 43 | 85 |
| P | Wrexham | 45 | 25 | 10 | 10 | 87 | 51 | 36 | 85 |
| 4 | MK Dons | 45 | 23 | 8 | 14 | 79 | 64 | 15 | 77 |
| 5 | Crewe AlexandraCrewe | 45 | 19 | 13 | 13 | 68 | 64 | 4 | 70 |
| 6 | BarrowBarrow | 44 | 18 | 14 | 12 | 60 | 53 | 7 | 68 |
| 7 | Crawley TownCrawley | 45 | 20 | 7 | 18 | 71 | 67 | 4 | 67 |
| 8 | Doncaster RoversDoncaster | 44 | 20 | 7 | 17 | 67 | 65 | 2 | 67 |
| 9 | Walsall | 45 | 18 | 11 | 16 | 68 | 68 | 0 | 65 |
| 10 | Bradford CityBradford | 44 | 17 | 12 | 15 | 55 | 57 | -2 | 63 |
| 11 | Gillingham | 45 | 18 | 9 | 18 | 44 | 55 | -11 | 63 |
| 12 | AFC Wimbledon | 45 | 16 | 14 | 15 | 59 | 50 | 9 | 62 |
| 13 | Harrogate TownHarrogate | 45 | 17 | 11 | 17 | 58 | 67 | -9 | 62 |
| 14 | Notts County | 45 | 18 | 7 | 20 | 89 | 85 | 4 | 61 |
| 15 | Tranmere RoversTranmere | 45 | 17 | 6 | 22 | 66 | 66 | 0 | 57 |
| 16 | Morecambe | 45 | 17 | 9 | 19 | 64 | 78 | -14 | 57 |
| 17 | Newport CountyNewport | 45 | 16 | 7 | 22 | 61 | 72 | -11 | 55 |
| 18 | Accrington StanleyAccrington | 45 | 15 | 9 | 21 | 59 | 70 | -11 | 54 |
| 19 | Swindon TownSwindon | 45 | 14 | 11 | 20 | 74 | 80 | -6 | 53 |
| 20 | Salford City | 45 | 13 | 11 | 21 | 64 | 80 | -16 | 50 |
| 21 | Grimsby Town | 45 | 11 | 16 | 18 | 57 | 72 | -15 | 49 |
| 22 | Colchester UnitedColchester | 44 | 11 | 11 | 22 | 57 | 75 | -18 | 44 |
| 23 | Sutton UnitedSutton | 45 | 9 | 14 | 22 | 55 | 80 | -25 | 41 |
| R | Forest Green RoversForest Green | 45 | 10 | 9 | 26 | 43 | 78 | -35 | 39 |
| > League Two Full Table | |||||||||
