Brown, who has been at the club for five years, led them from the Isthmian League to the Football League, but he has departed along with assistant Stuart Cash.
Brown joined the Dons in 2007, securing three promotions in four seasons, but he has lost his last three games in charge.
Simon Bassey has been appointed as caretaker manager.
Restore Data
| Team | P | W | D | L | F | A | GD | PTS | |
| 1 | Walsall | 18 | 11 | 4 | 3 | 34 | 19 | 15 | 37 |
| 2 | Port Vale | 19 | 10 | 5 | 4 | 26 | 19 | 7 | 35 |
| 3 | Doncaster RoversDoncaster | 19 | 9 | 6 | 4 | 28 | 22 | 6 | 33 |
| 4 | Crewe AlexandraCrewe | 18 | 8 | 7 | 3 | 22 | 16 | 6 | 31 |
| 5 | Grimsby Town | 19 | 10 | 1 | 8 | 27 | 28 | -1 | 31 |
| 6 | AFC Wimbledon | 18 | 9 | 3 | 6 | 30 | 16 | 14 | 30 |
| 7 | MK Dons | 17 | 9 | 3 | 5 | 30 | 19 | 11 | 30 |
| 8 | Chesterfield | 19 | 7 | 7 | 5 | 33 | 23 | 10 | 28 |
| 9 | Notts County | 18 | 7 | 7 | 4 | 25 | 18 | 7 | 28 |
| 10 | Gillingham | 18 | 8 | 2 | 8 | 19 | 16 | 3 | 26 |
| 11 | Bradford CityBradford | 18 | 6 | 7 | 5 | 23 | 19 | 4 | 25 |
| 12 | Salford City | 18 | 6 | 6 | 6 | 17 | 19 | -2 | 24 |
| 13 | BarrowBarrow | 18 | 6 | 5 | 7 | 18 | 17 | 1 | 23 |
| 14 | Bromley | 18 | 5 | 8 | 5 | 23 | 23 | 0 | 23 |
| 15 | Cheltenham TownCheltenham | 19 | 6 | 5 | 8 | 25 | 28 | -3 | 23 |
| 16 | Fleetwood TownFleetwood | 17 | 5 | 7 | 5 | 23 | 22 | 1 | 22 |
| 17 | Newport CountyNewport | 18 | 6 | 4 | 8 | 21 | 28 | -7 | 22 |
| 18 | Colchester UnitedColchester | 18 | 4 | 9 | 5 | 23 | 22 | 1 | 21 |
| 19 | Harrogate TownHarrogate | 19 | 6 | 3 | 10 | 16 | 28 | -12 | 21 |
| 20 | Accrington StanleyAccrington | 18 | 4 | 6 | 8 | 25 | 33 | -8 | 18 |
| 21 | Tranmere RoversTranmere | 18 | 4 | 6 | 8 | 12 | 25 | -13 | 18 |
| 22 | Swindon TownSwindon | 19 | 3 | 7 | 9 | 23 | 33 | -10 | 16 |
| 23 | Morecambe | 19 | 3 | 5 | 11 | 19 | 34 | -15 | 14 |
| 24 | Carlisle UnitedCarlisle | 18 | 3 | 5 | 10 | 15 | 30 | -15 | 14 |
| > League Two Full Table | |||||||||
