The 30-year-old suggested that Silva was a transsexual after the Brazilian took exception to criticism of his national team.
Barton is on loan at Marseille from Queens Park Rangers until the end of the season.
Marseille: Mandanda; Fanni, N'Koulou, Mendes, Morel; Romao, Cheyrou, J Ayew, Kadir; A Ayew, Gignac
Subs: Samba, Abdallah, Diawara, Barton, Abdullah, Amalfitano, Sougou
Bordeaux: Carrasso; Mariano, Sane, Planus, Tremoulinas; Traore, Sertic, Faubert, Plasil; Obraniak, Diabate
Subs: Keita, Poundje, Biyoko Poko, Maurice Belay, Saivet