Hoeness said that Dortmund are the most beatable team left in the competition so drawing them will give the best chance of reaching the final for the third time in four seasons.
"I think they are beatable, more so than the Spanish sides," UEFA.com quotes Hoeness as saying. "We want to get to the final and Dortmund are the opponents against who we have the best chance of achieving that.
"It's great for German football that there are two German teams in the semi-finals. German and Spanish football is clearly leading the way in Europe at the moment."
Bayern knocked out Italian side Juventus 4-0 on aggregate to reach the semis.